STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmrBMultidrug resistance membrane translocase; Permeases of the major facilitator superfamily (526 aa)    
Predicted Functional Partners:
pmrA
Multidrug resistance efflux pump; Membrane-fusion protein
 
 
 0.992
oprN5
Outer membrane protein
 
 
 0.963
yybA
Transcriptional regulators
   
   0.847
rmrA
Membrane-fusion protein
 
 
 0.808
XCC1411
Transcriptional regulators
 
 
 0.706
XCC1396
Transcriptional regulator; AraC-type DNA-binding domain-containing proteins
     
 0.640
XCC3489
Multidrug resistance efflux pump
 
 
 0.623
benE
Benzoate transporter; Uncharacterized protein involved in benzoate metabolism
      
 0.591
pcaK
MFS transporter; Permeases of the major facilitator superfamily
   
  
 0.589
XCC1685
MFS transporter; Permeases of the major facilitator superfamily
      
 0.586
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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