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pmrA protein (Xanthomonas campestris campestris) - STRING interaction network
"pmrA" - Multidrug resistance efflux pump in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmrAMultidrug resistance efflux pump; Membrane-fusion protein (397 aa)    
Predicted Functional Partners:
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily (526 aa)
 
 
  0.992
oprN5
Outer membrane protein (504 aa)
 
  0.977
yybA
Transcriptional regulators (147 aa)
     
 
  0.849
XCC2342
Transport protein; Permeases of the major facilitator superfamily (528 aa)
 
   
  0.781
XCC2341
Outer membrane protein (492 aa)
 
  0.734
oprN1
Outer membrane protein (490 aa)
 
  0.687
XCC1396
Transcriptional regulator; AraC-type DNA-binding domain-containing proteins (329 aa)
         
  0.651
oprN4
Outer membrane protein (474 aa)
 
  0.626
oprN6
Outer membrane protein (483 aa)
 
  0.577
raxC
Outer membrane protein (457 aa)
   
 
  0.576
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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