STRINGSTRING
yybA protein (Xanthomonas campestris campestris) - STRING interaction network
"yybA" - Transcriptional regulators in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yybATranscriptional regulators (147 aa)    
Predicted Functional Partners:
pmrA
Multidrug resistance efflux pump; Membrane-fusion protein (397 aa)
     
 
  0.849
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily (526 aa)
     
      0.847
oprN5
Outer membrane protein (504 aa)
              0.845
XCC1396
Transcriptional regulator; AraC-type DNA-binding domain-containing proteins (329 aa)
         
  0.665
parC
DNA topoisomerase 4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily (747 aa)
         
  0.508
XCC3657
annotation not available (184 aa)
   
          0.466
XCC1836
annotation not available (82 aa)
   
          0.447
XCC1144
annotation not available (168 aa)
   
          0.438
XCC2621
annotation not available (208 aa)
   
          0.428
XCC1118
annotation not available (256 aa)
   
          0.417
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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