STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yybATranscriptional regulators (147 aa)    
Predicted Functional Partners:
pmrA
Multidrug resistance efflux pump; Membrane-fusion protein
   
 
 0.849
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily
   
   0.847
oprN5
Outer membrane protein
       0.845
XCC1396
Transcriptional regulator; AraC-type DNA-binding domain-containing proteins
     
 0.665
parC
DNA topoisomerase 4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily
     
 0.508
XCC3657
annotation not available
  
     0.466
XCC1836
annotation not available
  
     0.447
XCC1144
annotation not available
  
     0.438
XCC2621
annotation not available
  
     0.428
XCC1118
annotation not available
  
     0.417
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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