STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmuPS-methylmethionine permease; Amino acid transporters (474 aa)    
Predicted Functional Partners:
mmuM
Homocysteine S-methyltransferase; Methionine synthase I (cobalamin-dependent),methyltransferase domain
  
 0.988
metR
Transcriptional regulator
   
  
 0.777
thrA
Bifunctional aspartokinase/homoserine dehydrogenase I; Aspartokinases
  
  
 0.720
XCC2819
Amino acid transporters
 
  
 0.662
XCC2856
Cystathionine beta-lyases/cystathionine gamma-synthases
  
  
 0.659
metF1
510-methylenetetrahydrofolate reductase
   
  
 0.633
metF2
510-methylenetetrahydrofolate reductase
   
  
 0.629
CAP52315.1
annotation not available
       0.591
XCC1342
Glyoxylase I family protein; Lactoylglutathione lyase and related lyases
       0.591
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
      
 0.588
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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