STRINGSTRING
XCC1340 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC1340" - Outer membrane receptor proteins, mostly Fe transport in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1340Outer membrane receptor proteins, mostly Fe transport (1038 aa)    
Predicted Functional Partners:
folH
Predicted aminopeptidases (549 aa)
   
          0.639
XCC3921
Peptidase; Predicted aminopeptidases (602 aa)
   
          0.590
XCC0024
Uncharacterized protein; Predicted aminopeptidases (594 aa)
   
          0.589
XCC1345
Uncharacterized protein conserved in bacteria (644 aa)
   
          0.576
XCC2407
annotation not available (618 aa)
   
          0.561
XCC2408
Uncharacterized protein conserved in bacteria (608 aa)
   
          0.547
XCC4040
Uncharacterized protein conserved in bacteria (605 aa)
   
          0.542
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (694 aa)
              0.520
cicA
Phosphotransferase; Phosphoserine phosphatase (246 aa)
              0.499
ydgM
Ferredoxin II; Part of a membrane complex involved in electron transport (139 aa)
              0.489
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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