STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1322Virulence protein; Type IV secretory pathway, VirJ component (457 aa)    
Predicted Functional Partners:
XCC1323
Putative membrane protein
 
  
 0.850
XCC1321
Uncharacterized protein; Unknown function
       0.633
XCC1319
RNA 2',3'-cyclic phosphodiesterase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
 
     0.536
XCC1973
annotation not available
  
     0.511
XCC3753
Tfp pilus assembly protein major pilin PilA
      
 0.489
XCC2621
annotation not available
  
     0.427
XCC2649
annotation not available
  
     0.425
XCC3148
Lipase/esterase; Phospholipase/lecithinase/hemolysin
  
   
 0.424
pefL
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
  
   
 0.422
XCC1390
annotation not available
  
     0.415
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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