STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1319RNA 2',3'-cyclic phosphodiesterase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester (200 aa)    
Predicted Functional Partners:
XCC1320
Uncharacterized protein conserved in bacteria
       0.747
hrpB1
annotation not available
  
     0.690
hrpB5
HrpB5 protein; Flagellar biosynthesis/type III secretory pathway protein
  
     0.688
hrpD5
annotation not available
  
     0.648
hrpX
HrpX protein; AraC-type DNA-binding domain-containing proteins
  
    0.639
hpaB
HpaB protein; Pathogenicity-related export of effector proteins to host plants
  
     0.602
hrcQ
HrcQ protein; Type III secretory pathway protein
  
     0.594
CAP52342.1
annotation not available
 
     0.583
XCC1322
Virulence protein; Type IV secretory pathway, VirJ component
 
     0.536
XCC0049
Uncharacterized protein conserved in bacteria
  
     0.509
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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