STRINGSTRING
XCC1308 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC1308" - Uncharacterized protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1308Uncharacterized protein (294 aa)    
Predicted Functional Partners:
rpoE5
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (232 aa)
 
          0.934
XCC1307
annotation not available (177 aa)
              0.852
XCC0131
annotation not available (223 aa)
   
          0.669
XCC3284
annotation not available (315 aa)
   
          0.640
XCC1115
annotation not available (643 aa)
   
          0.620
CAP52359.1
annotation not available (178 aa)
              0.610
CAP51726.1
Exported endopeptidase (283 aa)
   
          0.578
XCC3320
Prolyl oligopeptidase family protein; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases (656 aa)
   
          0.566
xcc-b100_1236
Acetyltransferases, including N-acetylases of ribosomal proteins (635 aa)
   
          0.525
XCC4237
Oar protein; Outer membrane receptor for ferrienterochelin and colicins (1006 aa)
   
          0.499
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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