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rpoE5 protein (Xanthomonas campestris campestris) - STRING interaction network
"rpoE5" - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoE5DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (232 aa)    
Predicted Functional Partners:
XCC1308
Uncharacterized protein (294 aa)
 
          0.934
XCC1307
annotation not available (177 aa)
              0.898
mucD
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain; Belongs to the peptidase S1C family (525 aa)
   
   
  0.714
XCC1268
annotation not available (286 aa)
   
 
  0.667
XCC2916
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (190 aa)
   
          0.658
fecR
Fe2+-dicitrate sensor, membrane component (341 aa)
 
 
  0.629
CAP52359.1
annotation not available (178 aa)
              0.616
flgJ
Unnamed protein product (395 aa)
       
      0.600
rpoN1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (478 aa)
           
  0.599
rpoN2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (487 aa)
           
  0.597
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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