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lhr2 protein (Xanthomonas campestris campestris) - STRING interaction network
"lhr2" - Helicase-related protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhr2Helicase-related protein; Lhr-like helicases (830 aa)    
Predicted Functional Partners:
XCC1288
Uncharacterized protein; Predicted ICC-like phosphoesterases (210 aa)
 
          0.977
XCC1291
Putative mRNA 3’-end processing factor; Predicted exonuclease of the beta-lactamase fold involved in RNA processing (336 aa)
 
          0.977
XCC1290
ATP-dependent DNA ligase (534 aa)
 
          0.976
CAP52375.1
annotation not available (77 aa)
              0.845
dnl
ATP-dependent DNA ligase (1001 aa)
 
          0.541
lig2
ATP-dependent DNA ligase (849 aa)
 
          0.519
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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