STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ech2Enoyl-CoA hydratase/carnithine racemase (390 aa)    
Predicted Functional Partners:
fadE4
Acyl-CoA dehydrogenases
 
 
 0.979
mmsB
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; Belongs to the 3-hydroxyisobutyrate dehydrogenase family
  
 0.959
ech3
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family
  
0.955
mmsA
NAD-dependent aldehyde dehydrogenases
 
 
 0.917
rpfF
RpfF protein; Enoyl-CoA hydratase/carnithine racemase
  
   
 0.764
fadA1
Acyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
  
 
 0.730
ivd
Acyl-CoA dehydrogenase; Leucine degradation
 
 
 0.721
XCC1259
Predicted transcriptional regulator
 
     0.710
fadA3
Acetoacetyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
 
 
 0.632
rpfB
RpfB protein; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
  
 
 0.611
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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