STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ech3Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family (265 aa)    
Predicted Functional Partners:
fadE4
Acyl-CoA dehydrogenases
 
 
 0.974
ech2
Enoyl-CoA hydratase/carnithine racemase
  
0.955
mmsB
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; Belongs to the 3-hydroxyisobutyrate dehydrogenase family
 
  
 0.914
mmsA
NAD-dependent aldehyde dehydrogenases
  
 
 0.897
fadA1
Acyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
 
 0.764
fadE3
Acyl-CoA dehydrogenases
 
 
 0.764
fadA3
Acetoacetyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
 
 0.722
fadA2
3-ketoacyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
 
 0.702
pcaF
Beta-ketoadipyl CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
 
 0.699
ivd
Acyl-CoA dehydrogenase; Leucine degradation
 
 
 0.679
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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