STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrcJLipoprotein; Type III secretory pathway lipoprotein EscJ (254 aa)    
Predicted Functional Partners:
hrcC
HrcC protein; Type III secretion system outer membrane protein
 
 
 0.992
hrcT
HrpB8 protein; Type III secretory pathway component EscT
 
  
 0.992
hrcN
HrpB6 protein; Flagellar biosynthesis/type III secretory pathway ATPase
 
  
 0.989
hrpB5
HrpB5 protein; Flagellar biosynthesis/type III secretory pathway protein
 
  
 0.985
hrcV
HrcV; Type III secretory pathway component EscV
 
  
 0.971
hrcS
annotation not available
 
  
 0.969
hrcR
HrcR protein; Type III secretory pathway component EscR
 
  
 0.961
hrpB1
annotation not available
 
   
 0.953
hrpB2
annotation not available
     
 0.940
hrcQ
HrcQ protein; Type III secretory pathway protein
 
  
 0.921
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (8%) [HD]