STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpB2annotation not available (130 aa)    
Predicted Functional Partners:
hrcJ
Lipoprotein; Type III secretory pathway lipoprotein EscJ
     
 0.940
hrcN
HrpB6 protein; Flagellar biosynthesis/type III secretory pathway ATPase
     
 0.933
hrpB5
HrpB5 protein; Flagellar biosynthesis/type III secretory pathway protein
     
 0.921
hrcT
HrpB8 protein; Type III secretory pathway component EscT
     
 0.919
hrpB7
annotation not available
     
 0.916
hrpB4
HrpB4 protein; Pathogenicity-related protein
     
 0.908
hrpB1
annotation not available
     
 0.904
hpaP
annotation not available
     
 0.781
hrcC
HrcC protein; Type III secretion system outer membrane protein
     
 0.780
hrcV
HrcV; Type III secretory pathway component EscV
     
 0.775
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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