STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrcVHrcV; Type III secretory pathway component EscV (640 aa)    
Predicted Functional Partners:
hrcU
HrcU protein; Type III secretion exporter
  
 0.994
hrcR
HrcR protein; Type III secretory pathway component EscR
 
  
 0.987
hrcS
annotation not available
 
  
 0.980
hrcN
HrpB6 protein; Flagellar biosynthesis/type III secretory pathway ATPase
 
  
 0.978
hrcT
HrpB8 protein; Type III secretory pathway component EscT
 
  
 0.975
hrcJ
Lipoprotein; Type III secretory pathway lipoprotein EscJ
 
  
 0.971
hrcC
HrcC protein; Type III secretion system outer membrane protein
 
  
 0.942
hrcQ
HrcQ protein; Type III secretory pathway protein
 
  
 0.940
hpaP
annotation not available
 
   
 0.923
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
  
 0.891
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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