STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrcQHrcQ protein; Type III secretory pathway protein (335 aa)    
Predicted Functional Partners:
hrcS
annotation not available
 
  
 0.985
hrpD5
annotation not available
 
   
 0.985
hrcR
HrcR protein; Type III secretory pathway component EscR
 
  
 0.973
hrpB5
HrpB5 protein; Flagellar biosynthesis/type III secretory pathway protein
 
 
 0.970
hpaP
annotation not available
 
   
 0.967
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
  
 
 0.965
flgJ
Unnamed protein product
  
  
 0.950
hrcV
HrcV; Type III secretory pathway component EscV
 
  
 0.940
hrcC
HrcC protein; Type III secretion system outer membrane protein
 
  
 0.934
hrpB1
annotation not available
 
   
 0.933
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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