STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpD6annotation not available (80 aa)    
Predicted Functional Partners:
hrpD5
annotation not available
     
 0.910
hpaA
annotation not available
     
 0.890
hrcQ
HrcQ protein; Type III secretory pathway protein
     
 0.875
hrcR
HrcR protein; Type III secretory pathway component EscR
     
 0.864
hrcS
annotation not available
     
 0.864
hrpE
HrpE protein; Hrp pilus
     
 0.785
hpaP
annotation not available
     
 0.756
hrcU
HrcU protein; Type III secretion exporter
     
 0.749
hrpB1
annotation not available
     
 0.739
hrcV
HrcV; Type III secretory pathway component EscV
     
 0.710
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (13%) [HD]