STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpEHrpE protein; Hrp pilus (90 aa)    
Predicted Functional Partners:
hpaB
HpaB protein; Pathogenicity-related export of effector proteins to host plants
     
 0.819
hrpD6
annotation not available
     
 0.785
hrpD5
annotation not available
     
 0.716
hpaA
annotation not available
     
 0.713
hrcU
HrcU protein; Type III secretion exporter
     
 0.712
hrcV
HrcV; Type III secretory pathway component EscV
     
 0.709
hrcC
HrcC protein; Type III secretion system outer membrane protein
     
 0.659
hpaP
annotation not available
     
 0.656
hrcQ
HrcQ protein; Type III secretory pathway protein
     
 0.621
hrcS
annotation not available
     
 0.620
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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