STRINGSTRING
hrpF protein (Xanthomonas campestris campestris) - STRING interaction network
"hrpF" - HrpF protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpFHrpF protein; Pathogenicity-related export of effector proteins to host plants (921 aa)    
Predicted Functional Partners:
hrpD5
annotation not available (315 aa)
   
     
  0.900
hrpB1
annotation not available (151 aa)
   
     
  0.896
hrcQ
HrcQ protein; Type III secretory pathway protein (335 aa)
   
     
  0.883
hpaP
annotation not available (203 aa)
   
     
  0.880
hrpB5
HrpB5 protein; Flagellar biosynthesis/type III secretory pathway protein (233 aa)
   
     
  0.862
hpaB
HpaB protein; Pathogenicity-related export of effector proteins to host plants (160 aa)
   
     
  0.854
hrpW
annotation not available (329 aa)
   
     
  0.841
hrcC
HrcC protein; Type III secretion system outer membrane protein (605 aa)
   
     
  0.817
hpa2
Hpa2 protein; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) (190 aa)
   
     
  0.796
hrpX
HrpX protein; AraC-type DNA-binding domain-containing proteins (476 aa)
   
     
  0.782
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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