STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspC3Transaminase; Aspartate/tyrosine/aromatic aminotransferase (374 aa)    
Predicted Functional Partners:
ucpA
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
    0.941
cefD
Isopenicillin N epimerase; Selenocysteine lyase
     
 0.841
XCC1211
Uncharacterized protein; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
  
 0.774
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
 
 0.757
CAP52458.1
NADPH-dependent glutamate synthase beta chain and related oxidoreductases
  
  
 0.738
thrA
Bifunctional aspartokinase/homoserine dehydrogenase I; Aspartokinases
  
 
 0.656
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids; Belongs to the alanine racemase family
     
 0.641
pdhC
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Transposase and inactivated derivatives
   
 
 0.634
XCC2855
Homoserine dehydrogenase; Unnamed protein product
 
 
 0.604
pdhA
Pyruvate/2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, eukaryotic type, alpha subunit
  
  
 0.596
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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