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cefD protein (Xanthomonas campestris campestris) - STRING interaction network
"cefD" - Isopenicillin N epimerase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cefDIsopenicillin N epimerase; Selenocysteine lyase (415 aa)    
Predicted Functional Partners:
ucpA
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (263 aa)
 
      0.876
aspC3
Transaminase; Aspartate/tyrosine/aromatic aminotransferase (374 aa)
         
  0.841
CAP52458.1
NADPH-dependent glutamate synthase beta chain and related oxidoreductases (261 aa)
 
          0.792
XCC2305
annotation not available (627 aa)
   
   
  0.731
XCC1211
Uncharacterized protein; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (269 aa)
              0.731
XCC2252
SufE protein probably involved in Fe-S center assembly (238 aa)
   
 
  0.613
sufD
ABC transporter permease; ABC-type transport system involved in Fe-S cluster assembly permease component (420 aa)
 
 
  0.594
XCC0219
NAD(P)H steroid dehydrogenase; Nucleoside-diphosphate-sugar epimerases (336 aa)
            0.589
sufB
ABC transporter permease; ABC-type transport system involved in Fe-S cluster assembly permease component (485 aa)
 
 
  0.587
XCC3368
Glutaredoxin-like protein; Rhodanese-related sulfurtransferase (308 aa)
 
 
  0.541
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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