STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52458.1NADPH-dependent glutamate synthase beta chain and related oxidoreductases (261 aa)    
Predicted Functional Partners:
XCC1211
Uncharacterized protein; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
     0.993
cefD
Isopenicillin N epimerase; Selenocysteine lyase
 
     0.792
ucpA
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
    0.782
aspC3
Transaminase; Aspartate/tyrosine/aromatic aminotransferase
  
  
 0.738
bioI
annotation not available
  
 
 0.695
XCC2912
Cytochrome P450 hydroxylase; Unnamed protein product; Belongs to the cytochrome P450 family
  
 
 0.532
cypC
Fatty acid alpha hydroxylase; Cytochrome P450
  
 
 0.417
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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