STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52479.1Site-specific recombinase XerD (464 aa)    
Predicted Functional Partners:
XCC0456
Opacity protein and related surface antigens
  
     0.608
CAP52478.1
annotation not available
       0.602
wxcD
wxcD; Glycosyltransferase
  
     0.583
wrbA
Tryptophan repressor binding protein; Multimeric flavodoxin WrbA
      
 0.581
XCC1350
annotation not available
  
     0.579
wxcB
Putative protein kinase; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase
  
  
 0.577
XCC0449
Lytic enzyme; RTX toxins and related Ca2+-binding proteins
  
   
 0.575
CAP51040.1
Putative peptidoglycan-binding domain-containing protein
  
     0.559
XCC1115
annotation not available
  
     0.554
hpaP
annotation not available
  
     0.545
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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