STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52487.1Predicted transcription factor, homolog of eukaryotic MBF1 (128 aa)    
Predicted Functional Partners:
CAP52189.1
Predicted transcriptional regulators
  
     0.746
CAP52488.1
Unknown
 
     0.738
CAP52485.1
annotation not available
       0.591
CAP52486.1
annotation not available
       0.591
XCC4229
annotation not available
  
     0.460
CAP52484.1
annotation not available
       0.453
celS1
Glycoside hydrolase; Belongs to the glycosyl hydrolase 12 (cellulase H) family
  
     0.415
virB6_2
VirB6-like membrane protein; Type IV secretory pathway, VirB6 components
  
     0.413
virB6_1
VirB6-like membrane protein; Type IV secretory pathway, VirB6 components
  
     0.409
xcsL
Type II secretory pathway component PulL
  
     0.408
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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