STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52488.1Unknown (377 aa)    
Predicted Functional Partners:
CAP52487.1
Predicted transcription factor, homolog of eukaryotic MBF1
 
     0.738
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity
  
 
 0.550
XCC1168
Hsp90xo protein; Molecular chaperone HSP90 family
  
 
 0.550
CAP52489.1
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains
  
     0.545
XCC0239
Uncharacterized protein; FOG: GGDEF domain
   
 
 0.519
CAP52490.1
Serine/threonine protein phosphatase
  
 
   0.502
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
   
 
 0.497
glnB1
Nitrogen regulatory protein PII; Belongs to the P(II) protein family
    
 
 0.489
glnB2
Nitrogen regulatory protein PII; Belongs to the P(II) protein family
    
 
 0.489
XCC2389
Ferredoxin
  
 
 0.485
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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