STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1197Dioxygenases related to 2-nitropropane dioxygenase (364 aa)    
Predicted Functional Partners:
nasA
Nitrate/nitrite transporter
    
  0.908
XCC1198
annotation not available
  
  
 0.904
nasD
NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
     
 0.902
nasE
Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
     
  0.900
XCC2009
Nitrate reductase; Anaerobic dehydrogenases typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
     
  0.900
XCC1196
Uncharacterized protein conserved in bacteria
       0.845
sseA
Rhodanese-related sulfurtransferase
  
    0.624
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family
       0.624
pheT
Phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
   
    0.588
fadB2
3-hydroxyacyl-CoA dehydrogenase
  
  
 0.556
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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