STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1196Uncharacterized protein conserved in bacteria (279 aa)    
Predicted Functional Partners:
XCC1198
annotation not available
  
    0.846
XCC1197
Dioxygenases related to 2-nitropropane dioxygenase
       0.845
CAP49462.1
Unknown
  
     0.646
XCC0240
annotation not available
 
 
 0.618
pel4
Pectate lyase E; Degradation of external pectate
  
     0.617
xcc-b100_1236
Acetyltransferases, including N-acetylases of ribosomal proteins
  
     0.614
XCC1115
annotation not available
 
     0.570
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family
  
    0.569
wxcD
wxcD; Glycosyltransferase
  
 
   0.558
XCC2029
Uncharacterized protein; Ketosteroid isomerase homolog
  
     0.555
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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