STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galMAldose 1-epimerase; Converts alpha-aldose to the beta-anomer (351 aa)    
Predicted Functional Partners:
bga1
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
 
  
 0.935
dgd
D-galactose 1-dehydrogenase; Predicted dehydrogenases and related proteins
 
 
 0.933
bga3
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
 
  
 0.930
bga2
Beta-galactosidase
 
  
 0.927
galE
UDP-glucose 4-epimerase
  
 0.918
glk2
Glucokinase; Belongs to the bacterial glucokinase family
    
 0.903
glk3
Glucokinase; Belongs to the bacterial glucokinase family
    
 0.903
glk1
Glucokinase; Belongs to the bacterial glucokinase family
    
 0.903
dgoK
2-keto-3-deoxy-galactonokinase
 
   
 0.690
XCC2033
Oxidoreductase; Predicted dehydrogenases and related proteins
 
  
 0.686
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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