STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylB4Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family (555 aa)    
Predicted Functional Partners:
abfA
Alpha-L-arabinosidase; Alpha-L-arabinofuranosidase
 
 
 0.958
xylB5
Xylosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
  
  
0.874
pglA1
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family
 
  
 0.857
xynB
annotation not available
 
  
 0.853
pglA2
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family
 
  
 0.840
xylB6
Xylosidase/arabinosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
  
  
 
0.814
uxaC
Glucuronate isomerase
    
 0.809
aguA
Xylan alpha-1,2-glucuronidase; Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family
 
   
 0.804
xylB2
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family
     0.804
xynA2
Beta-xylanase; Endohydrolyzes 1,4-beta-D-xylans
  
 0.778
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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