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rpsT protein (Xanthomonas campestris campestris) - STRING interaction network
"rpsT" - 30S ribosomal protein S20 in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (89 aa)    
Predicted Functional Partners:
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (46 aa)
   
 
  0.988
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
   
 
  0.984
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (89 aa)
   
 
  0.982
rplI
50S ribosomal protein L9; Binds to the 23S rRNA (149 aa)
   
 
  0.977
rpsB
Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family (275 aa)
   
 
  0.976
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (106 aa)
   
 
  0.973
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
     
 
  0.971
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (86 aa)
   
 
  0.971
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
     
 
  0.970
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA (86 aa)
   
 
  0.970
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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