STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1108Transcriptional regulator araC/xylS family; AraC-type DNA-binding domain-containing proteins (241 aa)    
Predicted Functional Partners:
XCC2415
4-hydroxyproline 2-epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha- ketoglutarate. Can also catalyze the epimerization of trans-3- hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp), albeit with 500-fold lower efficiency. Displays no proline racemase activity
 
     0.702
XCC1107
annotation not available
       0.551
XCC2414
Glycine/D-amino acid oxidase
 
     0.525
XCC2412
Oxidoreductase; Uncharacterized NAD(FAD)-dependent dehydrogenases
 
     0.506
XCC2178
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
  
     0.501
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
    
 
 0.484
soxA
Sarcosine oxidase alpha subunit; Uncharacterized NAD(FAD)-dependent dehydrogenases
 
     0.450
CAP52601.1
annotation not available
       0.438
aldH
Ketoglutarate semialdehyde dehydrogenase; NAD-dependent aldehyde dehydrogenases
 
   
 0.415
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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