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hopR protein (Xanthomonas campestris campestris) - STRING interaction network
"hopR" - Transducer protein car in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hopRTransducer protein car; Predicted membrane protein (2049 aa)    
Predicted Functional Partners:
regS
Two-component system sensor protein; Signal transduction histidine kinase (409 aa)
           
  0.588
XCC0847
ECF sigma factor; DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (203 aa)
     
      0.424
rfaY
Probable RNA polymerase sigma factor RfaY; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in lipopolysaccharide biosynthesis and pathogenicity (400 aa)
     
      0.424
XCC1267
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (206 aa)
     
      0.424
rpoE5
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (232 aa)
     
      0.424
XCC1334
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (187 aa)
     
      0.424
rpoE4
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (193 aa)
     
      0.424
XCC2644
Uncharacterized protein; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) (224 aa)
     
      0.424
XCC2916
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (190 aa)
     
      0.424
fecI
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (169 aa)
     
      0.424
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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