STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1081Uncharacterized protein; Putative alpha-12-mannosidase (782 aa)    
Predicted Functional Partners:
XCC2893
Uncharacterized protein
  
 0.758
nahA
N-acetyl-beta-hexosaminidase
     0.708
fucA2
Uncharacterized protein; Alpha-L-fucosidase
 
   
 0.581
XCC3162
Glycosyl hydrolase; Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
 
     0.563
XCC3447
Uncharacterized protein; Metal-dependent hydrolase
  
     0.536
XCC1082
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family
       0.516
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis
 
     0.469
bmnA
Beta-mannosidase; Beta-galactosidase/beta-glucuronidase
 
     0.433
gaa
Glutaryl-7-ACA acylase; Predicted acyl esterases
  
     0.414
XCC2028
Uncharacterized protein; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
 
     0.407
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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