STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1080Uncharacterized protein (240 aa)    
Predicted Functional Partners:
CAP52631.1
annotation not available
       0.845
XCC1115
annotation not available
  
     0.703
XCC1079
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
      0.630
XCC1078
Uncharacterized protein; Glucoamylase and related glycosyl hydrolases
       0.629
xcc-b100_1236
Acetyltransferases, including N-acetylases of ribosomal proteins
  
     0.598
CAP49462.1
Unknown
  
     0.564
gpm2
Phosphoglycerate mutase 1
  
     0.559
XCC3284
annotation not available
  
     0.533
parD
Plasmid stabilization protein; Involved in plasmid partition
  
     0.508
hrpW
annotation not available
  
     0.496
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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