STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srfJO-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family (566 aa)    
Predicted Functional Partners:
bga1
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
 
 
 0.926
bga3
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
 
 
 0.925
ugcG
Uncharacterized protein; Glycosyltransferases, probably involved in cell wall biogenesis
  
  
  0.823
phoQ
Two-component system sensor protein; Signal transduction histidine kinase
      
 0.660
lamA
Endo-1,3-beta-glucanase; Beta-glucanase/Beta-glucan synthetase
 
   
 0.642
phoP
Two-component system regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
      
 0.589
groEL
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
    
 
 0.536
XCC1076
ADP-dependent (S)-NAD(P)H-hydrate dehydratase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
       0.457
XCC1075
Uncharacterized protein; Fructose-26-bisphosphatase; Belongs to the phosphoglycerate mutase family
       0.457
XCC3550
annotation not available
  
     0.429
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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