STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52646.1Restriction endonuclease (296 aa)    
Predicted Functional Partners:
CAP52643.1
Restriction endonuclease S subunits
 
     0.860
CAP52645.1
Type I restriction-modification system methyltransferase subunit
 
     0.851
CAP52642.1
Type I site-specific restriction-modification system R (restriction) subunit and related helicases
 
     0.849
XCC1065
annotation not available
 
     0.733
XCC1066
annotation not available
       0.694
CAP52644.1
Virulence protein
 
     0.687
XCC1063
annotation not available
 
     0.671
XCC1064
annotation not available
 
     0.649
hsdM
Type I restriction-modification system methyltransferase subunit
 
     0.507
hsdR
Type I restriction enzyme R Protein; Subunit R is required for both nuclease and ATPase activities, but not for modification
 
     0.447
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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