STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1041Outer membrane receptor proteins, mostly Fe transport (1034 aa)    
Predicted Functional Partners:
XCC1042
Glycerophosphoryl diester phosphodiesterase
 
     0.883
XCC1668
annotation not available
  
     0.732
XCC1401
annotation not available
  
     0.708
XCC2595
annotation not available
  
     0.683
XCC3208
annotation not available
  
     0.671
XCC1682
Serine kinase of the HPr protein, regulates carbohydrate metabolism
  
     0.664
CAP51862.1
Signal transduction kinase
  
     0.663
appA
annotation not available
 
     0.647
XCC1719
annotation not available
   
  
 0.630
XCC2400
Outer membrane receptor proteins mostly Fe transport
  
  
 0.626
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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