STRINGSTRING
prpF protein (Xanthomonas campestris campestris) - STRING interaction network
"prpF" - Uncharacterized protein conserved in bacteria in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpFUncharacterized protein conserved in bacteria (399 aa)    
Predicted Functional Partners:
acnD
Aconitate hydratase 1; Aconitase A (864 aa)
 
 
  0.993
acnB
Aconitate hydratase B; Aconitase B; Belongs to the aconitase/IPM isomerase family (863 aa)
       
  0.913
prpB
2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate; Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family (298 aa)
 
   
  0.759
prpC
Citrate synthase; Belongs to the citrate synthase family (384 aa)
 
   
  0.756
XCC1034
Uncharacterized protein (110 aa)
              0.589
XCC1035
Plasmid stabilization system protein (105 aa)
              0.589
XCC1037
Outer membrane receptor proteins mostly Fe transport (738 aa)
              0.439
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (12%) [HD]