STRINGSTRING
slp protein (Xanthomonas campestris campestris) - STRING interaction network
"slp" - Starvation-inducible outer membrane lipoprotein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slpStarvation-inducible outer membrane lipoprotein (178 aa)    
Predicted Functional Partners:
XCC1006
Uncharacterized protein; Transglutaminase-like enzymes putative cysteine proteases (649 aa)
              0.898
XCC1007
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) (318 aa)
              0.898
XCC1008
Methanol dehydrogenase regulator; MoxR-like ATPases (317 aa)
              0.898
XCC1009
Uncharacterized protein; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family (618 aa)
              0.657
XCC1010
Uncharacterized protein; Glycosyltransferases involved in cell wall biogenesis (166 aa)
              0.593
XCC2164
Uncharacterized protein conserved in bacteria (169 aa)
   
          0.551
XCC1012
Uncharacterized protein (388 aa)
              0.512
CAP52712.1
Unknown (272 aa)
              0.509
XCC1268
annotation not available (286 aa)
   
        0.503
gcvR
Glycine cleavage system transcriptional repressor; Unnamed protein product (208 aa)
   
          0.496
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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