STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icd1Isocitrate/isopropylmalate dehydrogenase (335 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
 
 0.982
icd2
Monomeric isocitrate dehydrogenase
     
 0.970
rpfA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
 
 0.957
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
 
 0.948
sucA
2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, and related enzymes
  
 0.937
argH
Argininosuccinate lyase; Unnamed protein product
 
 
 0.907
acnB
Aconitate hydratase B; Aconitase B; Belongs to the aconitase/IPM isomerase family
    
  0.901
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the LeuD family. LeuD type 1 subfamily
  
 0.857
XCC3244
Ketoglutarate semialdehyde dehydrogenase; NAD-dependent aldehyde dehydrogenases
   
 0.829
aldH
Ketoglutarate semialdehyde dehydrogenase; NAD-dependent aldehyde dehydrogenases
   
 0.829
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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