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mopB protein (Xanthomonas campestris campestris) - STRING interaction network
"mopB" - Outer membrane protein and related peptidoglycan-associated in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mopBOuter membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (365 aa)    
Predicted Functional Partners:
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
   
 
  0.930
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
      0.930
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5’-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (201 aa)
   
 
  0.927
rpmF
annotation not available (64 aa)
     
 
  0.926
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family (55 aa)
   
 
  0.921
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (41 aa)
     
 
  0.921
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
     
 
  0.921
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (113 aa)
     
      0.920
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family (180 aa)
     
      0.920
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (76 aa)
     
      0.920
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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