STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatAXAsp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases (542 aa)    
Predicted Functional Partners:
xylC
Benzaldehyde dehydrogenase II; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family
  
 
 0.906
XCC1791
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family
  
 
 0.905
acyP
Acylphosphatase; Hydrogenase maturation factor
    
  0.902
gctA
Acyl CoA:acetate/3-ketoacid CoA transferase,alpha subunit
     
  0.900
gctB
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit
     
  0.900
hpd
4-hydroxyphenylpyruvate dioxygenase and related hemolysins
     
  0.800
fldA
Uncharacterized protein conserved in bacteria
     
  0.800
aspS
Aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily
  
 
 0.655
asnS
Asparagine--tRNA ligase; Aspartyl/asparaginyl-tRNA synthetases
  
 
 0.612
XCC0925
Predicted membrane protein
       0.589
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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