STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0857Xylanase; O-Glycosyl hydrolase (405 aa)    
Predicted Functional Partners:
manA
Mannan endo-1,4-beta-mannosidase; Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family
 
   
 0.707
xynA3
Beta-xylanase; Beta-1,4-xylanase
 
   
 0.701
galA1
Arabinogalactan endo-14-beta-galactosidase
  
     0.634
pel2
annotation not available
  
   
 0.631
pel3
Pectate lyase
  
   
 0.623
engXCA
Major extracellular endoglucanase; Endoglucanase
 
   
 0.621
XCC1752
Cellulase; Uncharacterized protein related to plant photosystem II stability/assembly factor
  
     0.577
XCC0856
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D
       0.561
XCC0855
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily
       0.561
XCC2398
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family
   
 0.522
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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