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XCC0847 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC0847" - ECF sigma factor in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0847ECF sigma factor; DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily (203 aa)    
Predicted Functional Partners:
XCC0845
annotation not available (162 aa)
 
          0.945
XCC0846
annotation not available (117 aa)
              0.898
XCC1268
annotation not available (286 aa)
   
 
  0.667
flgJ
Unnamed protein product (395 aa)
       
      0.600
fecR
Fe2+-dicitrate sensor, membrane component (341 aa)
   
 
  0.577
XCC3686
Methyltransferase; Unnamed protein product (1210 aa)
     
 
  0.560
XCC1333
Uncharacterized protein conserved in bacteria (279 aa)
     
 
  0.514
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1405 aa)
     
 
  0.511
XCC2360
Signal transduction histidine kinase (1364 aa)
     
 
  0.494
XCC2273
Uncharacterized protein; Lysine 23-aminomutase (342 aa)
       
      0.478
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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