STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0820Transcriptional regulator; AraC-type DNA-binding domain-containing proteins (247 aa)    
Predicted Functional Partners:
glnS
Glutamine--tRNA ligase; Glutamyl- and glutaminyl-tRNA synthetases
       0.697
XCC0819
Integral membrane protein; Permeases of the drug/metabolite transporter (DMT) superfamily
 
     0.597
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family
     
 0.572
XCC0818
Uncharacterized protein; Outer membrane receptor for Fe3+-dicitrate
       0.536
XCC0823
annotation not available
       0.512
XCC0822
Glutathione S-transferase
       0.512
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
    
 
 0.484
XCC3317
Transcriptional regulator; FOG: WD40 repeat
 
 
 
 0.472
XCC2178
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
  
     0.433
CAP52900.1
annotation not available
       0.410
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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