STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0811Transcriptional regulators (156 aa)    
Predicted Functional Partners:
ech4
P-hydroxycinnamoyl CoA hydratase/lyase; Enoyl-CoA hydratase/carnithine racemase
 
     0.789
XCC0351
Transcriptional regulators
  
     0.762
badH
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family
 
   
 0.602
XCC4126
annotation not available
  
     0.526
XCC0155
annotation not available
  
     0.524
fadD
Acid-CoA ligase; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
 
   
 0.499
XCC0084
annotation not available
 
     0.488
XCC0363
Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit
  
     0.483
ligA
annotation not available
 
   
 0.469
XCC1829
annotation not available
  
     0.459
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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