STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
badHNAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family (489 aa)    
Predicted Functional Partners:
ech4
P-hydroxycinnamoyl CoA hydratase/lyase; Enoyl-CoA hydratase/carnithine racemase
  
 
 0.754
XCC0742
NADPH:quinone reductase and related Zn-dependent oxidoreductases
   
 
 0.640
fadD
Acid-CoA ligase; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
 
 0.616
XCC0811
Transcriptional regulators
 
   
 0.602
sseA
Rhodanese-related sulfurtransferase
   
  
 0.590
fdx
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
      
 0.585
adh
Zn-dependent alcohol dehydrogenases class III
  
 
 0.583
metF2
510-methylenetetrahydrofolate reductase
    
 
 0.533
metF1
510-methylenetetrahydrofolate reductase
    
 
 0.533
pat
Phosphinothricin N-acetyltransferase; Sortase and related acyltransferases
     
 0.530
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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