STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaQTranscriptional regulator (333 aa)    
Predicted Functional Partners:
ligA
annotation not available
 
     0.743
pobR
PobR regulator; AraC-type DNA-binding domain-containing proteins
 
  
 0.718
ligB
annotation not available
 
     0.712
pcaH
Protocatechuate 34-dioxygenase beta subunit
     
 0.633
gctB
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit
     
 0.601
pobA
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
 
 0.553
hrpG
HrpG protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
  
 
   0.547
uidR
Transcriptional regulator
  
 
   0.527
XCC3332
Transcriptional regulator
  
     0.517
pcaC
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
     
 0.498
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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