STRINGSTRING
ligA protein (Xanthomonas campestris campestris) - STRING interaction network
"ligA" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligAannotation not available (119 aa)    
Predicted Functional Partners:
ligB
annotation not available (299 aa)
   
  0.999
fldA
Uncharacterized protein conserved in bacteria (351 aa)
 
   
    0.934
pobA
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases (394 aa)
 
   
  0.931
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Protocatechuate 34-dioxygenase beta subunit (187 aa)
         
  0.907
pcaH
Protocatechuate 34-dioxygenase beta subunit (245 aa)
         
  0.907
fldW
4-oxalomesaconate hydratase; Predicted metal-dependent hydrolase of the TIM-barrel fold (340 aa)
 
          0.781
fldZ
Acyl transferase; Demethylmenaquinone methyltransferase (223 aa)
 
          0.772
fldY
Transcriptional regulator (435 aa)
 
          0.762
pcaQ
Transcriptional regulator (333 aa)
 
          0.743
vanR
Transcriptional regulators (284 aa)
 
          0.688
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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