STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanRTranscriptional regulators (284 aa)    
Predicted Functional Partners:
hutC
Histidine utilization repressor; Transcriptional regulators
  
   
 0.751
ligB
annotation not available
 
     0.748
hutG
Formylglutamate amidohydrolase; Unnamed protein product
      
 0.702
ligA
annotation not available
 
     0.688
vanB
Vanillate O-demethylase oxidoreductase; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
     
 0.632
hutI
Imidazolonepropionase and related amidohydrolases; Belongs to the metallo-dependent hydrolases superfamily. HutI family
  
  
 0.614
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
   
  
 0.609
hutH
Histidine ammonia-lyase; Unnamed protein product; Belongs to the PAL/histidase family
      
 0.608
pcaQ
Transcriptional regulator
       0.466
nadM
Bifunctional NMN adenylyltransferase/nudix hydrolase; Nicotinamide mononucleotide adenylyltransferase; ADP-ribose pyrophosphatase
      
 0.436
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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